NMD-VCell Research Workbench Module: Data & API · evidence-to-experiment workflow NMD = neuromuscular disorders
v1.0 candidate Frozen 25 Jul 2026 DOI pending
v1.0.0-database-resource Schema 1.1 Model ridge-safe-v2.3 Benchmark repeated-fold-v2.2 Build EA-20260729-15 v1.0 is a database and evidence-governance release; it is not a validated disease-prediction or clinical decision-support release.
Current evidence ceiling L2 observed HepG2 limited L3a context No independent DMD perturbation validation Open boundary
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Archived and internal versioned-file ledger

Historical object—not used by the current website or manuscript unless the current manifest explicitly lists it as a required layer. Older dictionaries, debug logs, reviewer responses and intermediate tables remain available for provenance; their filenames are versioned and their identities never override the current objects.

Candidate download layer. The current website overlay is v1.0.0-database-resource. Historical archives remain unchanged and checksum-addressed; DOI/archive deposition and manuscript submission remain pending.

LEGACY v0.7 field dictionary

Historical dictionary retained for provenance. New integrations should start with the Schema 1.1 dictionary.

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Hosted release layers

The public website serves checksum-verified parts for the SQLite object and retains current archive objects. The superseded v0.7 archive and historical GPU handoff bundle are excluded from public hosting; their provenance and checksums remain in historical ledgers.

120-table SQLite database · multipart site copy · nmd_vcell_database_resource_v0.8.1-v24r1-20260722.tar.gz · feature_delta_head_comparison.tsv

External candidate-evidence import kit

Header-only TSV template · Field dictionary · JSON Schema · Preflight validator · Protocol

The three gates are provenance, context match and statistical interpretation. A nonsignificant P value alone does not establish a negligible effect. Preflight verdicts are advisory and never change candidate status automatically.

Leave-GFOD2-out sensitivity addendum

Read the result · Two-stage intervals · Module-block intervals · 20 claim gates · SHA-256 manifest · Reproduction script

Package map

226 downloads shown.

All versioned downloads
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v24r1_integrity_corrected_internal_status.mdDocumentation / figurepresent2.3 KB5effdb8db1a2…
v24r1_manuscript_review_candidate.mdDocumentation / figurepresent34.0 KBfa0312754d26…
v24r1_review_package_audit.tsvReusable tablepresent486 B639a20b6759e…
v24r1_review_package_manifest.tsvReusable tablepresent2.0 KB4118b7f36a2f…
validate_external_candidate_evidence_import.pyCodepresent7.2 KB684740905244…

The current Workbench overlay archive is intentionally omitted from this self-contained ledger table to avoid embedding the archive's own SHA-256 inside a file that is packaged into that same archive. Its final identity is locked in overlay_archive_identity.json and the release file registry.