NMD-VCell Research Workbench Module: Data & API · evidence-to-experiment workflow NMD = neuromuscular disorders
Search Release v1.0 candidate
Governance ▾
Scientific program Methods Claim boundary Benchmarks v1 release gate v1 authorization Prediction gate Registry Transitions Maintenance
v1.0 candidate Frozen 25 Jul 2026 DOI pending
v1.0.0-database-resource Schema 1.1 Model ridge-safe-v2.3 Benchmark repeated-fold-v2.2 Build EA-20260729-15 v1.0 is a database and evidence-governance release; it is not a validated disease-prediction or clinical decision-support release.
Current evidence ceiling L2 observed HepG2 limited L3a context No independent DMD perturbation validation Open boundary

Download hub

The default download page now contains only current release objects. Reproducibility materials and the historical ledger live on separate routes so readers do not have to visually parse every archived file.

Release manifest

Composite release manifest

The authoritative map for the two-layer release: analysis core, Workbench overlay, SQLite, API, schemas and checksums.

Use
Single authority manifest
Version
v1.0.0-database-resource
Size
JSON
SHA
see checksums
Open manifest
Portable release

Component-resolved bundle

A machine-readable portable bundle map for the analysis core, SQLite and Workbench overlay, with exact object IDs and checksums.

Use
Portable reconstruction
Version
v1.0.0-database-resource
Size
JSON + component files
SHA
b435f2100bad…
Open portable bundle
SQLite

120-table relational database

120 non-empty tables for local SQL inspection.

Use
Relational reuse
Version
v1.0.0-database-resource
Size
35.4 MB
SHA
874377d9…
Get SQLite
Core TSV

Candidate-state tables

Current action, transition history and evidence-state policy; use these instead of historical ranks for current decisions.

Use
Current candidate state
Version
v1.0.0-database-resource
Size
7.5 KB
SHA
c76fe5ec…
Download TSV
Gene JSON / API

17,921 typed gene records

Checksum-addressable buckets plus schema 1.1 OpenAPI; no login or generated server-side score.

Use
Bulk gene API
Version
v1.0.0-database-resource
Size
bucketed JSON
SHA
per bucket
Open manifest · OpenAPI
Reproducibility

Checksums and file registry

Verify public bytes, object identities and release boundaries before reuse or deposition.

Use
Rebuild / verify
Version
v1.0.0-database-resource
Size
route bundle
SHA
checksums
Open reproducibility
Study Cards + schemas

21 draft Study Cards

YAML/TSV exports, prediction-card schema and outcome-board schema for prospective registration.

Use
Study design scaffold
Version
v1.0.0-database-resource
Size
YAML/TSV
SHA
manifested
Open registry · Example YAML

Current identity

Three objects define the current release candidate

Analysis core

FILE:CORE:v0.8.1:v24r1:20260722

canonical_database_v1_release_bundle

49,295,320 bytes · SHA b435f2100bad…

SQLite

FILE:SQLITE:v0.9.2:schema1.1:20260725

nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite

37,122,048 bytes · SHA 874377d932b6…

Workbench overlay

FILE:OVERLAY:v1.0.0-database-resource:stage5.65:20260728

nmd_vcell_research_workbench_overlay_v1.0.0_database_resource_20260728_stage5_65.tar.gz

Read identity object

Database release candidatev1.0.0-database-resourceComposite identity · b435f2100bad…
Analysis corev0.8.1BUNDLE:DATABASE_V1:STAGE5_44
Relational payloadSQLite schema 1.1FILE:SQLITE:v0.9.2:schema1.1:20260725
Workbench overlayv1.0FILE:OVERLAY:v1.0.0-database-resource:stage5.65:20260728
Browse all audit files
Composite identity: the analysis core and Evidence Atlas module overlay are both required; the versioned SQLite is the current relational representation. Inspect the single authority manifest. Formal v1.0 DOI deposition, institution-approved licences and final maintainer metadata remain external release gates.